PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold05307-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 112aa    MW: 12680.7 Da    PI: 10.6009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold05307-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.3e-154797156
                                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                      + ykGVr  +++g+Wv+e+r+p++   + r++lg++  +++Aaka++ a+++l+ge
  snap_masked-scaffold05307-abinit-gene-0.4-mRNA-1 47 PVYKGVR--ERNGKWVCELRHPKK---KSRVWLGTWPCPDMAAKAYDVAALALKGE 97
                                                      68****6..679*********854...6*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-94797IPR001471AP2/ERF domain
SMARTSM003809.0E-2348110IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1648105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-2648105IPR001471AP2/ERF domain
PROSITE profilePS5103219.00648104IPR001471AP2/ERF domain
CDDcd000188.05E-2549106No hitNo description
PRINTSPR003674.7E-74960IPR001471AP2/ERF domain
PRINTSPR003674.7E-786106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MALREGTSPT NSDIMYHQCT SHLKTQPQSG MQKRKAGRKK FQETRHPVYK GVRERNGKWV  60
CELRHPKKKS RVWLGTWPCP DMAAKAYDVA ALALKGESAS LNFPEAACVL PR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913339.12e-75dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI44e-33DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z54e-33DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A2N9G2V21e-59A0A2N9G2V2_FAGSY; Uncharacterized protein
STRINGVIT_08s0007g03790.t011e-44(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-26C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]