PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold05527-abinit-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 97aa    MW: 11490.8 Da    PI: 5.6651
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold05527-abinit-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.11e-08752245
                                                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                                    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                                        +WT+   +++ +a  +++++   +W+  ar +g g+t ++++ ++ 
  snap_masked-scaffold05527-abinit-gene-0.10-mRNA-1  7 SNWTAKQNKRFENALVMYPKDtpdRWHNLARAVG-GKTVEEVIKHYE 52
                                                       58********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.864459IPR017884SANT domain
SMARTSM007176.8E-7557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-4761IPR009057Homeodomain-like
CDDcd001672.38E-5855No hitNo description
SuperFamilySSF466896.28E-12862IPR009057Homeodomain-like
PfamPF002499.6E-6853IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASGGSSNWT AKQNKRFENA LVMYPKDTPD RWHNLARAVG GKTVEEVIKH YEELVEDLRQ  60
IETGHVPLPN YRDTEENSKG YNYMDEEQRY YIYKILY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-29195192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917969.18e-62protein RADIALIS-like 2
SwissprotQ1A1733e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2N9GM878e-46A0A2N9GM87_FAGSY; Uncharacterized protein
STRINGGLYMA14G08101.12e-39(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-36RAD-like 6