PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold06969-abinit-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 382aa MW: 41626.5 Da PI: 6.0073

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold06969-abinit-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	6	31	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C +C ksF +s++++Hi+ H snap_masked-scaffold06969-abinit-gene-0.6-mRNA-1 6 FICAapHCLKSFLKRSEFESHINEsH 31 678888****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.85	6	32	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	31	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MMEGIFICAA PHCLKSFLKR SEFESHINES HADLLQPNAE KEDGNESESQ SVKQSGASES 60 TARAPPRPVI SPGSNSQIHD REDKTRRQQP REPPPSRPNV QPKQPQSFGQ VQNHPSELQP 120 DNNRPQGFDR LGPQNRFHQQ GFDTQGGPQQ ESGQFPDKQQ GILSENQFPE YPPMHSLQTP 180 NFAVPVNTNP MLNPPPPFGY PPFQTEGGQP FYGAPYEMTR QDSASEVGAE QGSLLGFPPV 240 QAGGVNFSGN YAQPWNGGGF VGAPFEHPHS GHGMLDGFAN ASDSHGKAAF HQGDYGRNSG 300 GLLLNPPPLA NKGMEQAQSG NAMDPRDGKG ILAPQPMPLP PPPPPPPHQS QLKRKFYPES 360 SRDGQGYGWQ HENRDSYGSG QD

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MMEGIFICAA PHCLKSFLKR SEFESHINES HADLLQPNAE KEDGNESESQ SVKQSGASES  60
TARAPPRPVI SPGSNSQIHD REDKTRRQQP REPPPSRPNV QPKQPQSFGQ VQNHPSELQP  120
DNNRPQGFDR LGPQNRFHQQ GFDTQGGPQQ ESGQFPDKQQ GILSENQFPE YPPMHSLQTP  180
NFAVPVNTNP MLNPPPPFGY PPFQTEGGQP FYGAPYEMTR QDSASEVGAE QGSLLGFPPV  240
QAGGVNFSGN YAQPWNGGGF VGAPFEHPHS GHGMLDGFAN ASDSHGKAAF HQGDYGRNSG  300
GLLLNPPPLA NKGMEQAQSG NAMDPRDGKG ILAPQPMPLP PPPPPPPHQS QLKRKFYPES  360
SRDGQGYGWQ HENRDSYGSG QD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023906770.1	0.0	E3 ubiquitin-protein ligase Hakai
TrEMBL	A0A2N9EZF1	0.0	A0A2N9EZF1_FAGSY; Uncharacterized protein
STRING	XP_010101828.1	1e-156	(Morus notabilis)