PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C3H

Protein Properties

Length: 255aa MW: 28212.9 Da PI: 7.8957

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.9	2.3e-10	89	113	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1 89 FKTKLCCKFRA-GTCPYVTNCNFAHS 113 69*******.***********8 PP
2	zf-CCCH	19.2	2.2e-06	163	188	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188 78888********************7 PP
3	zf-CCCH	42.9	8.2e-14	224	249	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1 224 WKTRICNKWELTGYCPFGSKCHFAHG 249 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.61E-8	86	119	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-14	86	121	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.003	88	114	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.131	88	115	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-7	89	113	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-9	161	190	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.77E-8	161	190	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.058	162	189	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.23	162	190	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-15	219	250	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-9	221	249	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.2E-9	223	250	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	223	251	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.2E-11	224	249	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDFSGGNVVQ VITGSGPENW GVNDNAMWAT EDDYRAWNNN NGDDTPSNSN YDQRQSQSRS 60 GSEPPNKKSK NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF AHSIEELRRP 120 PPNWQEIVAQ HEEEKGVSSE PREEYQIPSL GSSNFVGDSQ RSYKGRHCKK FYTEEGCPYG 180 DNCTFLHDEQ SKNRESVAIS LGPGGYGGAA TSPVSGPNAK PSNWKTRICN KWELTGYCPF 240 GSKCHFAHGA AVPKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023923480.1	0.0	zinc finger CCCH domain-containing protein 12 isoform X1
Swissprot	Q9LQM3	2e-94	C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBL	A0A2N9GAB3	1e-169	A0A2N9GAB3_FAGSY; Uncharacterized protein
STRING	XP_010096556.1	1e-142	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7751	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	6e-97	C3H family protein