PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold07697-abinit-gene-0.4-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 241aa MW: 26248.9 Da PI: 8.7384

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold07697-abinit-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.7	3.5e-40	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+ snap_masked-scaffold07697-abinit-gene-0.4-mRNA-1 17 EQEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRA 77 57899****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	7	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MQDPASTFQS MKPQFPEQEQ LKCPRCESTN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGA 60 LRNIPVGGGS RKNTKRASSN TKRSSSSTSS ASASASASAS SSSSASNSVV QNQGSEHDPT 120 RIFGDQDRRM LDITGSFSSL LASNGQFGNL LEGMNPNGSG LKMVQMGEFA ENLDSGHVLD 180 AGSGRNPEME MQSNNGNSES FLGLQNEGDK PQGQNTSHSK AFLNVMDLTF DIGHFPFLKI 240 K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023906311.1	1e-125	dof zinc finger protein DOF3.1-like isoform X2
Swissprot	O82155	3e-46	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2N9HU28	1e-102	A0A2N9HU28_FAGSY; Uncharacterized protein
STRING	XP_008228327.1	1e-84	(Prunus mume)
STRING	evm.model.supercontig_131.40	1e-84	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	4e-42	DOF zinc finger protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]