PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold09409-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 231aa    MW: 25989.8 Da    PI: 4.9875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold09409-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-1856105255
                                               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                       +++GVr ++ +gr+v+eIr p   g+++r++lg+fg+ae+Aa+a++ a++ l+g
  snap_masked-scaffold09409-abinit-gene-0.3-mRNA-1  56 QFRGVRKRR-WGRYVSEIRLP---GQKTRIWLGSFGSAEMAARAYDSAALFLKG 105
                                                       69****887.**********8...557***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3056119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2856115IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-1956114IPR016177DNA-binding domain
PROSITE profilePS5103220.69256113IPR001471AP2/ERF domain
CDDcd000181.27E-2856114No hitNo description
PfamPF008474.4E-1157105IPR001471AP2/ERF domain
PRINTSPR003672.2E-85768IPR001471AP2/ERF domain
PRINTSPR003672.2E-87995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSVMPMGEDQ HEAPPDQNQL KPTHLESNSK TNKKRTAQKR QPEEEEAPPR RQRDNQFRGV  60
RKRRWGRYVS EIRLPGQKTR IWLGSFGSAE MAARAYDSAA LFLKGNLASL NFPDMAHSLP  120
RPESSSRRDI QSAAAKAALP LSENNPSVAS ASSSEEDDFW CGFDFDFDFD FDMCTTSSSF  180
QQVNNATGEA PPLFSPLRFD SVDLSQPQDL TGFLMPSPTD DELFLASYFH M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13551131372Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904679.11e-121ethylene-responsive transcription factor ERF039-like
TrEMBLA0A2N9EDW81e-62A0A2N9EDW8_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.18e-32ERF family protein