PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold09633-abinit-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 111aa    MW: 12780.7 Da    PI: 9.8135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold09633-abinit-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.2e-102107397
                                                       EE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS.-EEEEEE.. CS
                                                B3   3 kvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesg.rsWevkliy 52 
                                                       k+lt+sd ++s++l l  + + +h          ++++ ++  +t+ d+++   +e+ ++ 
  snap_masked-scaffold09633-abinit-gene-0.8-mRNA-1   2 KTLTKSDIGSSSQLLLHQSLVHAHimaffsadsvKKIESNGLSITVFDRDSkSDYELVFKK 62 
                                                       89*******************999*******999777778889999997773679999999 PP

                                                       EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE CS
                                                B3  53 rkksgryvltkGW.keFvkangLkegDfvvFkld.grsefelvvkvf 97 
                                                       + +s++yv+ + W ++Fv   +Lk+gD++ ++ d  +s+f  ++ v+
  snap_masked-scaffold09633-abinit-gene-0.8-mRNA-1  63 WPSSKSYVFNGKWhEDFVARRKLKVGDIIGLYWDpCHSKF--NFCVL 107
                                                       *************446****************65333555..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.50E-141107No hitNo description
PfamPF023621.3E-72106IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-132107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-132106IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MKTLTKSDIG SSSQLLLHQS LVHAHIMAFF SADSVKKIES NGLSITVFDR DSKSDYELVF  60
KKWPSSKSYV FNGKWHEDFV ARRKLKVGDI IGLYWDPCHS KFNFCVLQRA H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880111.12e-68B3 domain-containing protein At2g33720-like
TrEMBLA0A2N9FWD64e-41A0A2N9FWD6_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-23B3 family protein