PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold12685-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 207aa    MW: 22482.8 Da    PI: 4.3458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold12685-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-174797155
                                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                      + y+GVr++  +g+WvAeIr+p  ng  kr +lg+ + a +Aa a+++a++ ++g
  snap_masked-scaffold12685-abinit-gene-0.2-mRNA-1 47 CNYRGVRQRT-WGKWVAEIREP--NG-GKRLWLGTLDNAVDAASAYDEAARVMYG 97
                                                      56*****999.**********9..33.5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-104797IPR001471AP2/ERF domain
CDDcd000182.00E-3047107No hitNo description
SuperFamilySSF541713.73E-2048107IPR016177DNA-binding domain
PROSITE profilePS5103220.38948105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2948107IPR001471AP2/ERF domain
SMARTSM003801.9E-3248111IPR001471AP2/ERF domain
PRINTSPR003674.3E-114960IPR001471AP2/ERF domain
PRINTSPR003674.3E-1187107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MESSKKRKSR GDGVSVAETL ARWRDYGVEP SRKGCMKGKG GPENALCNYR GVRQRTWGKW  60
VAEIREPNGG KRLWLGTLDN AVDAASAYDE AARVMYGAYA RLNFPESVST ISGPSPVESE  120
VSAVESTAMA STSESTAMPT TSSLVQDESG VTSYSMDSGL DQYLDCSENE LFNVQELMAL  180
LDSDPVGFTD SEVGFDYYGD QFGMPSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1748110568ATERF1
3gcc_A5e-1748110568ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885805.11e-125putative dehydration-responsive element-binding protein 2H
SwissprotQ8LFR22e-40DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A2N9GRQ37e-59A0A2N9GRQ3_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-33ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]