PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold12800-abinit-gene-0.4-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 115aa MW: 13133.2 Da PI: 10.548

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold12800-abinit-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	82.3	9.9e-26	16	94	51	128
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfyk 110 + +e+ewyfFs+r++ky +g r+nrat+sgy ka g+dk++l++ ++e +g+kk Lvfy+ snap_masked-scaffold12800-abinit-gene-0.4-mRNA-1 16 ALFGEDEWYFFSQRNRKYLNGARPNRATASGYRKANGTDKPILTScRSECIGIKKALVFYT 76 334788***********************************9988889******* PP NAM 111 grapkgektdWvmheyrl 128 gr pk++ktdWvm+e rl snap_masked-scaffold12800-abinit-gene-0.4-mRNA-1 77 GRPPKAVKTDWVMDENRL 94 ************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.427	1	115	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-26	15	96	IPR003441	NAC domain
Pfam	PF02365	7.4E-11	16	93	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MPNKLLSRLF MPQQKALFGE DEWYFFSQRN RKYLNGARPN RATASGYRKA NGTDKPILTS 60 CRSECIGIKK ALVFYTGRPP KAVKTDWVMD ENRLLDMSIS SRLNGSMRVS GYGCQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-32	15	112	65	157	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-32	15	112	65	157	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-32	15	112	65	157	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-32	15	112	65	157	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	15	112	68	160	NAC domain-containing protein 19
3swm_B	1e-31	15	112	68	160	NAC domain-containing protein 19
3swm_C	1e-31	15	112	68	160	NAC domain-containing protein 19
3swm_D	1e-31	15	112	68	160	NAC domain-containing protein 19
3swp_A	1e-31	15	112	68	160	NAC domain-containing protein 19
3swp_B	1e-31	15	112	68	160	NAC domain-containing protein 19
3swp_C	1e-31	15	112	68	160	NAC domain-containing protein 19
3swp_D	1e-31	15	112	68	160	NAC domain-containing protein 19
4dul_A	9e-32	15	112	65	157	NAC domain-containing protein 19
4dul_B	9e-32	15	112	65	157	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022756099.1	2e-42	NAC domain-containing protein 68-like
Refseq	XP_028069678.1	3e-42	NAC domain-containing protein 10-like
Swissprot	A0SPJ6	3e-35	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A2N9HWN8	2e-48	A0A2N9HWN8_FAGSY; Uncharacterized protein
STRING	GLYMA12G29360.1	5e-41	(Glycine max)
STRING	GLYMA13G40251.1	5e-41	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-37	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]