PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

BBR-BPC

Protein Properties

Length: 236aa MW: 25879.7 Da PI: 10.6043

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	239.6	2.2e-73	40	236	106	301
GAGA_bind 106 ksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk..pkekka 164 + ++ +q+ ep ++ +++ + + +++i++a++ ak +k+k++ +++++ k+ + snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 40 NPLQGTQMNPEPGIAVTPIRTIPATTEPKTNINSATKAAKVRKQKNSMKEPNQiaSKVFRV 100 4455555555566666666655555555555655555555555544444443311444445 PP GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkW 225 k++kk ++++ kk+k +s++e ++++k i++ +++ ++D s++P+P CsCtG +r CYkW snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 101 KQAKK-TPSTSKKTKGQSMPEAKREKKIPINIDMDKTDFDFSGVPAPYCSCTGNPRACYKW 160 55555.44444555555556667777779****************************** PP GAGA_bind 226 GnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286 G+GGWqS+CCt+++S yPLP+s++r+g+R+agrKmS+ga+ klL +La+eG+dl +pvDLk snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 161 GAGGWQSSCCTINVSEYPLPMSSTRPGSRMAGRKMSNGAYGKLLLRLATEGHDLTHPVDLK 221 ********************************************************* PP GAGA_bind 287 dhWAkHGtnkfvtir 301 dhWA+HGtnkfv i+ snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 222 DHWARHGTNKFVIIK 236 **********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.6E-68	22	236	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.8E-67	64	236	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGTYTNRNPM IPEATAGASV PHFTWFYPGS FMSASKSNSN PLQGTQMNPE PGIAVTPIRT 60 IPATTEPKTN INSATKAAKV RKQKNSMKEP NQIASKVFRV KQAKKTPSTS KKTKGQSMPE 120 AKREKKIPIN IDMDKTDFDF SGVPAPYCSC TGNPRACYKW GAGGWQSSCC TINVSEYPLP 180 MSSTRPGSRM AGRKMSNGAY GKLLLRLATE GHDLTHPVDL KDHWARHGTN KFVIIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925955.1	1e-170	protein BASIC PENTACYSTEINE7
Refseq	XP_023925956.1	1e-170	protein BASIC PENTACYSTEINE7
Refseq	XP_023925957.1	1e-170	protein BASIC PENTACYSTEINE7
Swissprot	O82286	4e-65	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A2N9GYJ8	1e-154	A0A2N9GYJ8_FAGSY; Uncharacterized protein
STRING	cassava4.1_015308m	1e-114	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16430	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	2e-64	basic pentacysteine 7