PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold14478-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 234aa    MW: 25506.1 Da    PI: 9.2183
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold14478-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601346e-42421411100
                                            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61 
                                                       +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r da++sl
  snap_masked-scaffold14478-abinit-gene-0.2-mRNA-1  42 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRADAANSL 102
                                                       7************************************************************ PP

                                            DUF260  62 vyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                                       vyeA+ r+rdPvyG++g i++lqqq+++l+ael+++++e
  snap_masked-scaffold14478-abinit-gene-0.2-mRNA-1 103 VYEANLRLRDPVYGCMGAISALQQQIHSLQAELNSVRTE 141
                                                       **********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.01141142IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-4242139IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSRDRERLDE IAKKIKRETD ATSQMGRRHL LGPSGTLNTI TPCAACKLLR RRCAEECPFS  60
PYFSPHEPHK FAAVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANLRL RDPVYGCMGA  120
ISALQQQIHS LQAELNSVRT EILKYKYREA TCSISSSSPA DLVPFGAVSI AAPQRTLRPP  180
PPTPPPPPPP PPVFSSPPIV VTSLSSSSST SFYIPPTSTT SYSSILSGNV SYFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-454214911118LOB family transfactor Ramosa2.1
5ly0_B2e-454214911118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874967.11e-142LOB domain-containing protein 15-like
SwissprotQ8L5T57e-82LBD15_ARATH; LOB domain-containing protein 15
TrEMBLD7T4G01e-102D7T4G0_VITVI; Uncharacterized protein
STRINGVIT_13s0067g02380.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-84LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]