PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold15166-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 101aa    MW: 11822.5 Da    PI: 10.2672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold15166-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-165801798
                                                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                                                B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79
                                                      ++p kf++eh+ k   s   tl+ ++g  W+v+l  +k  + ++  +GW++Fv+ + ++ g f
  snap_masked-scaffold15166-abinit-gene-0.2-mRNA-1  5 RFPEKFVREHEDK--LSSVATLTVPNGSIWQVRL--EKANNNIWVCGGWRNFVEHHSINYGHF 63
                                                      579*******877..67799**************..999999999****************** PP

                                                      EEEEE-SSSEE..EEEEE- CS
                                                B3 80 vvFkldgrsefelvvkvfr 98
                                                      +vFk++g+s+f  +v vf+
  snap_masked-scaffold15166-abinit-gene-0.2-mRNA-1 64 LVFKHKGNSKF--HVLVFD 80
                                                      ******99999..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.551182IPR003340B3 DNA binding domain
SMARTSM010195.2E-7382IPR003340B3 DNA binding domain
PfamPF023621.7E-13580IPR003340B3 DNA binding domain
CDDcd100171.40E-16580No hitNo description
Gene3DG3DSA:2.40.330.101.4E-20582IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-21581IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MSLQRFPEKF VREHEDKLSS VATLTVPNGS IWQVRLEKAN NNIWVCGGWR NFVEHHSINY  60
GHFLVFKHKG NSKFHVLVFD MTATEIRYPP NGHKKRAGQF E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895233.18e-51B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9HI648e-45A0A2N9HI64_FAGSY; Uncharacterized protein
STRINGXP_002519140.13e-30(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-26B3 family protein