PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold15166-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 89aa    MW: 9867.75 Da    PI: 10.5528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold15166-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-1510841498
                                                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                                                B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76
                                                      + +++p+  ++ + gk  +   ++l+ +sg+ W      + k+     +kGWk+Fv++ng+k+
  snap_masked-scaffold15166-abinit-gene-0.4-mRNA-1 10 CSMSIPNLLTSIFVGK--K--PVKLQASSGKWWPGST--SPKR----VSKGWKSFVRDNGIKV 62
                                                      6788888777444444..2..49999*******9999..7776....79************** PP

                                                      T-EEEEEE-SSSEE..EEEEE- CS
                                                B3 77 gDfvvFkldgrsefelvvkvfr 98
                                                      gD +vF+l++r++  l+v++fr
  snap_masked-scaffold15166-abinit-gene-0.4-mRNA-1 63 GDACVFELINRMDVVLKVSIFR 84
                                                      **************9*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0018186IPR003340B3 DNA binding domain
CDDcd100172.25E-13184No hitNo description
PROSITE profilePS5086311.237186IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-14585IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-14685IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-13984IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MLICNSSILC SMSIPNLLTS IFVGKKPVKL QASSGKWWPG STSPKRVSKG WKSFVRDNGI  60
KVGDACVFEL INRMDVVLKV SIFRMAEYA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901689.14e-28B3 domain-containing transcription factor VRN1-like
RefseqXP_023901698.14e-28B3 domain-containing transcription factor VRN1-like
RefseqXP_023901705.14e-28B3 domain-containing transcription factor VRN1-like
RefseqXP_023901713.14e-28B3 domain-containing transcription factor VRN1-like
STRINGVIT_03s0063g01450.t011e-13(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-10B3 family protein