PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold15396-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26201.8 Da    PI: 6.6718
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold15396-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.8e-22959151
                                                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                      k+ien s  qvt++kRr gi+KKA+EL vLCd++v +++fs+tg+l  ++s
  snap_masked-scaffold15396-abinit-gene-0.3-mRNA-1  9 KKIENPSSLQVTYCKRRDGIIKKASELAVLCDTDVGLVMFSPTGRLTSFAS 59
                                                      68*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.908161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-24374IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVRKKLTVKK IENPSSLQVT YCKRRDGIIK KASELAVLCD TDVGLVMFSP TGRLTSFASN  60
GRIEDIFLRY IDRPSELRGG PIENEECLYQ SLKNSKHEGE ILEQIAKYYN PDIEKITSIY  120
DALVHQKFLT NAIQRIEEMK AKLLGKQIIP LEPNSIEVGK EKESQSSEVP VLDIKDSNFM  180
AEESVDSNGR RNPVMEDHHQ QKTCSLGGPH LSIDYLKTQS NWNLQCGSTS QG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895909.11e-161agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA0A2R6QWC93e-72A0A2R6QWC9_ACTCH; Agamous-like MADS-box protein
STRINGEOX991896e-70(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1753967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.18e-29AGAMOUS-like 104