PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold15864-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 245aa    MW: 28077.5 Da    PI: 9.9816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold15864-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17153203155
                                               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                       + y+GVr +k+ ++Wv+e r+p   +k+ r++lg+f tae+Aa+a++ a  +l+g
  snap_masked-scaffold15864-abinit-gene-0.2-mRNA-1 153 PVYRGVR-RKNAQKWVCEMREP---NKKSRIWLGTFPTAEMAARAHDVAVIALRG 203
                                                       68****9.6779******9998...347***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-12153203IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-19154213IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-29154213IPR001471AP2/ERF domain
PROSITE profilePS5103220.877154211IPR001471AP2/ERF domain
SMARTSM003802.1E-26154217IPR001471AP2/ERF domain
CDDcd000186.77E-28155213No hitNo description
PRINTSPR003671.8E-7155166IPR001471AP2/ERF domain
PRINTSPR003671.8E-7177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLNLCDICSI EFESSSAHML NLLDEKVMLK VMLASQNPMK RDGRKKFKET RHPVYLMGSD  60
ICSTEFESSS ACMLNLLDKE VMLASQNLKR RDGRNKFKET RHPVYLMGSD ICSTEFESSS  120
ARMLNLLDEE VMLASQNPKR RDGRKKFKET RHPVYRGVRR KNAQKWVCEM REPNKKSRIW  180
LGTFPTAEMA ARAHDVAVIA LRGQSGCLNF ADSKWRLPIP ASTTAKDIQR TAAEAAKEFR  240
PEKLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898058.13e-84dehydration-responsive element-binding protein 1A-like
TrEMBLA5HIK06e-68A5HIK0_BETPN; CBF/DREB1 transcription factor 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.23e-56ERF family protein