PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ZF-HD
Protein Properties Length: 245aa    MW: 27166.7 Da    PI: 8.8843
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.9e-3356113259
                                       ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                                                       + vrYkeClkNhAa++Gg+a+DGCgEfmps+g+egt++alkC+AC+CHRnFHR+e e+
  snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1  56 KVVRYKECLKNHAATIGGNATDGCGEFMPSTGDEGTIEALKCSACNCHRNFHRKEIES 113
                                                       679****************************************************986 PP
2Homeobox17.47.4e-06177234154
                                                       TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                          Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                       +r Rt+ftkeq e + ++ e    k +++ +++ ++  +++g++ r+ kvW +N + k
  snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1 177 KRFRTKFTKEQKEKMLSFAEkagwKMQKLEESTVQQFCQETGIKRRVLKVWMHNNKHK 234
                                                       789***********98766577778*****************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.3E-2958111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2158112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.1E-3259111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.94160110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.7E-30167236IPR009057Homeodomain-like
SuperFamilySSF466897.1E-20174235IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-26176232IPR006455Homeodomain, ZF-HD class
CDDcd000860.00106177234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MNSSTQKGEM PFSRSCIHAG GNGHVVPYSE SQPSKSNSAD PPCPSPTLED HRPHKKVVRY  60
KECLKNHAAT IGGNATDGCG EFMPSTGDEG TIEALKCSAC NCHRNFHRKE IESHCSSQCY  120
HTPLILNNAI LGSPIGYPAN SLIVSYKSGS VPSESDEKDD DDDGCGVVAR PAEKVRKRFR  180
TKFTKEQKEK MLSFAEKAGW KMQKLEESTV QQFCQETGIK RRVLKVWMHN NKHKFALKKK  240
TPPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231772331874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4620679e-43AM462067.2 Vitis vinifera contig VV78X194955.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927442.11e-173zinc-finger homeodomain protein 4-like
SwissprotQ9M9S04e-62ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2N9F4F34e-98A0A2N9F4F3_FAGSY; Uncharacterized protein
STRINGPOPTR_0004s14270.12e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-53homeobox protein 31