PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold20678-abinit-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 330aa MW: 35055.6 Da PI: 8.8982

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold20678-abinit-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.5e-39	58	115	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ snap_masked-scaffold20678-abinit-gene-0.2-mRNA-1 58 NQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKN 115 68899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	57	114	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	59	115	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	61	115	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	63	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MIQELLGGAG LIAGERKIST NGGVLQTSTP PSSPSPAPSP SSSTTTATTA TTTSNSDNQN 60 LRCPRCDSSN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGA LRNVPIGGGC RKNKNGTIST 120 SVSKSSCSKI KTLTSEFGRS GLGTGFDHDL SSSPILWGSP QNSHLLALLR ATQNPNPNHS 180 PSPLSNSVHV KEEGNMVGSH LMTEPVVSTG ALNARTLGLD PLGHGQVPSL GLCSSFWRNN 240 QHQAQQQNGF VSNGEVQNSS SGIQELYQRL RSSSNYYGHD HSPVVLSNLA SSSSTSSSIL 300 ESASVAGGEL GYWNPTFSWS DLPTTNGAYP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023921650.1	0.0	dof zinc finger protein DOF1.1-like
Refseq	XP_023921651.1	0.0	dof zinc finger protein DOF1.1-like
TrEMBL	A0A2N9FYW4	1e-161	A0A2N9FYW4_FAGSY; Uncharacterized protein
STRING	POPTR_0007s11620.1	1e-139	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-32	Dof family protein