PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 209aa    MW: 24573.8 Da    PI: 6.532
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.35.7e-2598182186
                                          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkry 61 
                                                       +W + ev+aLi++r+ +e+++r + +++  Wee+s  +   g++rs+k+Ckekw+n+nk++
  snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1  98 KWLEAEVQALITLRTTLEHKFRPTGSRGSIWEEISVELYNMGYNRSAKKCKEKWDNMNKYF 158
                                                       7************************************************************ PP

                                          trihelix  62 kkikegekkrtsessstcpyfdqle 86 
                                                       ++  e+ kk+ + + + c+yf++l+
  snap_masked-scaffold22822-abinit-gene-0.2-mRNA-1 159 RRSMESGKKH-AANGKACQYFHDLN 182
                                                       *********9.556669*****995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-590155IPR009057Homeodomain-like
PROSITE profilePS500907.28291155IPR017877Myb-like domain
SuperFamilySSF466894.55E-595157IPR009057Homeodomain-like
CDDcd122034.07E-2297161No hitNo description
PfamPF138376.8E-2097182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MERQERMHQE LMEVIEKREQ ERRIREEAWR QQEMERMKRE EELRAQEMSR SLALISLIQN  60
ILGDEIQVPQ PLITPCKEED GGEIGMQNEV KCDPNNKKWL EAEVQALITL RTTLEHKFRP  120
TGSRGSIWEE ISVELYNMGY NRSAKKCKEK WDNMNKYFRR SMESGKKHAA NGKACQYFHD  180
LNILYGNGLI NAGNNVKNAN NENEAKSEN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873934.11e-127trihelix transcription factor GT-2 isoform X1
TrEMBLA0A2N9GR491e-114A0A2N9GR49_FAGSY; Uncharacterized protein
STRINGXP_004139609.12e-92(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.14e-34Trihelix family protein