PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62000099-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 122aa    MW: 14053 Da    PI: 8.5687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62000099-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-054466123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C +Cgk+F  + + ++H +++
  AUR62000099-RA 44 FACRKCGKPFAVRGDWRTHEKNC 66
                    78*****************9987 PP
2zf-C2H211.40.0017393523
                    TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2  5 dCgksFsrksnLkrHirt..H 23
                    +Cg  F++k +Lk Hi++  H
  AUR62000099-RA 73 ICGSDFKHKRSLKDHIKSfgH 93
                    8***************98666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFACRKCG KPFAVRGDWR  60
THEKNCGKLW YCICGSDFKH KRSLKDHIKS FGHGHAAYGI DCFEEEDEPA SEIEQDNESN  120
Q*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.13e-79C2H2 family protein