PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000319-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 396aa MW: 43170.5 Da PI: 8.7279

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000319-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	7.2e-12	28	52	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++rtG C++G++C+F+H+ AUR62000319-RA 28 GEPDCSFYLRTGLCRFGSTCRFNHP 52 6899********************8 PP
2	zf-CCCH	32	2.2e-10	58	77	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ AUR62000319-RA 58 YYLKTGTCKFGATCKFNHPK 77 8*****************96 PP
3	zf-CCCH	38	2.7e-12	99	123	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ AUR62000319-RA 99 EPECAYYLRTGQCKFGSTCKFHHPQ 123 799********************97 PP
4	zf-CCCH	38.1	2.6e-12	257	283	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G+ C+F+H++ AUR62000319-RA 257 PGQPECQYYMKTGDCKFGAVCRFHHPR 283 5789*********************96 PP
5	zf-CCCH	40.3	5.3e-13	303	329	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ AUR62000319-RA 303 PGEPLCIFYSRYGICKFGPNCKFDHPM 329 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
SMWPVNMRSS EALDTGIYPP GPYPEREGEP DCSFYLRTGL CRFGSTCRFN HPSNRKLYYL 60 KTGTCKFGAT CKFNHPKDKA GIAGRVPVNV LGYPLRPNEP ECAYYLRTGQ CKFGSTCKFH 120 HPQPSASFRG SSVYPPVQSP TTPGQHSYPG GLTNWSLSRA SIIPSPRWQG PSSYTPLILP 180 QGVVSVPGWN AYMGQMGSVS SPEGQQQTSG NSPGYGTARQ SESVVAASQG AYSSYRSGSI 240 PMGYYALQRD NVFPERPGQP ECQYYMKTGD CKFGAVCRFH HPRERLVPAP DCLLSALGLP 300 LRPGEPLCIF YSRYGICKFG PNCKFDHPMG IFAYNVSPTS TDASAMRRYL GSSSAAGLTL 360 TSEGLVESGT GKNRRLSLSE TRDLQSGDDD VETDR*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

SMWPVNMRSS EALDTGIYPP GPYPEREGEP DCSFYLRTGL CRFGSTCRFN HPSNRKLYYL  60
KTGTCKFGAT CKFNHPKDKA GIAGRVPVNV LGYPLRPNEP ECAYYLRTGQ CKFGSTCKFH  120
HPQPSASFRG SSVYPPVQSP TTPGQHSYPG GLTNWSLSRA SIIPSPRWQG PSSYTPLILP  180
QGVVSVPGWN AYMGQMGSVS SPEGQQQTSG NSPGYGTARQ SESVVAASQG AYSSYRSGSI  240
PMGYYALQRD NVFPERPGQP ECQYYMKTGD CKFGAVCRFH HPRERLVPAP DCLLSALGLP  300
LRPGEPLCIF YSRYGICKFG PNCKFDHPMG IFAYNVSPTS TDASAMRRYL GSSSAAGLTL  360
TSEGLVESGT GKNRRLSLSE TRDLQSGDDD VETDR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-147	C3H family protein