PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000484-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 980aa MW: 110488 Da PI: 4.8367

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000484-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.8e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l AUR62000484-RA 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l AUR62000484-RA 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD DNYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRQR KRKRKGIDYN AEIPFEKRPP PGFYDVVEEE RPVEQPKFPT 240 TIDELEGERR VDREARLRKQ DIAKNKIAER QDAPGAIMQA NKLNDPETVR KRSKLMLPPP 300 QISDQELEEI ARMGYASDLL AGNQELADGS GATHALLANY SQTPRQGMTP MRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGDNPDL HPSDFSGVTP KKRDVQTPNP MLTPSATPGG 420 TSLTPRIGMT PSRDGNSFSM TPKGTPIRDE LRINEEMDMH DSEKLELRRQ AELKRNLRMG 480 LSGLPEPKNE YEVVVRPEPE DSEDPEEQIE EDMSDRLARE KAAEEARQQA LLRKRSKVLQ 540 RELPRPPSAS VELIKNSLMR AGEDKSSFVP PTDIEQADEM VRKELLSLLE HDNAKYPLSE 600 KEQKKAAKRN ANTVPVIEDF ELDELKEAGS FIEEEAQYLC VATGHQEETL DDFVEAHKTC 660 LNDLMYFPTR NAYGLSSVAG TVEKLAALQN EFENVKRKMD DDNRKAQRLE KKIDVLTHGY 720 KMRADKLKTQ IELTFKQMNT AGTELDCFLA LQRQENMAAS FRIKGLWEEV QKQKEVEKTL 780 QKRYGDRVAE LESIRQLMDQ YRKAEDIEAK KHLEELAENA ANQASLLSSE TPEPVSAMEV 840 DSSDDVRPQE DGEASETVNR ASLQNDMHTD GDVASIADTQ SISLASEAKG SEAAMEQNAD 900 DTNVPNSILD NTDHPVGEAL ESNGFVNGEP VTISKLETQE VDGELSSQIN EAEGNKLMID 960 GDVGEPVERV EDGSSNNQV*

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD DNYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRQR KRKRKGIDYN AEIPFEKRPP PGFYDVVEEE RPVEQPKFPT  240
TIDELEGERR VDREARLRKQ DIAKNKIAER QDAPGAIMQA NKLNDPETVR KRSKLMLPPP  300
QISDQELEEI ARMGYASDLL AGNQELADGS GATHALLANY SQTPRQGMTP MRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGDNPDL HPSDFSGVTP KKRDVQTPNP MLTPSATPGG  420
TSLTPRIGMT PSRDGNSFSM TPKGTPIRDE LRINEEMDMH DSEKLELRRQ AELKRNLRMG  480
LSGLPEPKNE YEVVVRPEPE DSEDPEEQIE EDMSDRLARE KAAEEARQQA LLRKRSKVLQ  540
RELPRPPSAS VELIKNSLMR AGEDKSSFVP PTDIEQADEM VRKELLSLLE HDNAKYPLSE  600
KEQKKAAKRN ANTVPVIEDF ELDELKEAGS FIEEEAQYLC VATGHQEETL DDFVEAHKTC  660
LNDLMYFPTR NAYGLSSVAG TVEKLAALQN EFENVKRKMD DDNRKAQRLE KKIDVLTHGY  720
KMRADKLKTQ IELTFKQMNT AGTELDCFLA LQRQENMAAS FRIKGLWEEV QKQKEVEKTL  780
QKRYGDRVAE LESIRQLMDQ YRKAEDIEAK KHLEELAENA ANQASLLSSE TPEPVSAMEV  840
DSSDDVRPQE DGEASETVNR ASLQNDMHTD GDVASIADTQ SISLASEAKG SEAAMEQNAD  900
DTNVPNSILD NTDHPVGEAL ESNGFVNGEP VTISKLETQE VDGELSSQIN EAEGNKLMID  960
GDVGEPVERV EDGSSNNQV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDVRQRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein