PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62000717-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26299.6 Da    PI: 10.3369
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62000717-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.7e-151050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i n+s r+ tf kR++g+lKK +EL +LC++e +++i s+
  AUR62000717-RA 10 YITNDSARKATFKKRKKGLLKKLSELTTLCAVEGCLLIHSP 50
                    699***********************************997 PP
2SRF-TF52.65.9e-1776117142
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                     ++i n+s r+ tf kR++g++KK +EL +LC+++++ ii+s+
  AUR62000717-RA  76 EFITNDSARKATFNKRKKGLFKKVSELTTLCGVDACAIIYSP 117
                     689*************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MARKKLKLEY ITNDSARKAT FKKRKKGLLK KLSELTTLCA VEGCLLIHSP YAARTEAWPS  60
RSEARRVLER NKVKLEFITN DSARKATFNK RKKGLFKKVS ELTTLCGVDA CAIIYSPYAP  120
SAEVWPSQAG AHSVLKRFKN LSQDDQGKKM LDQEKYLKQR IAKAEQLLEK LKKNNREKEI  180
NNIMYECLNG TRNLEGLNLE DTMDLCMLAR KTSKEINERI VSLEKNAGDN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKLKLEYITNDSARKATFKKRK
21732RKATFKKRKKGLLKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-41M-type_MADS family protein