PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000893-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

NF-YC

Protein Properties

Length: 210aa MW: 23119.1 Da PI: 5.246

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000893-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	172.9	3.5e-54	31	132	3	101
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 +sfw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+filel+lrsw+h+eenkrrtl+k+diaaa+trtdifdflvd AUR62000893-RA 31 QSFWQNQyqdIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELSLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 125 79**9999********************************************************************************* PP NF-YC 95 ivprdel 101 ivpr++l AUR62000893-RA 126 IVPREDL 132 **987 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MDQQGHGQAP AVGTVSGAGQ VPYGSAYQPN QSFWQNQYQD IEKVTDFKNH SLPLARIKKI 60 MKADEDVRMI SAEAPVVFAR ACEMFILELS LRSWNHTEEN KRRTLQKNDI AAAITRTDIF 120 DFLVDIVPRE DLKDDVLATL PRGTGMPVAG PADALPYYYM PPAQNPAQAG PPGVMMGNPN 180 AYAAQSQPYM GQPMWPQQPP QRQQSSSDA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	108	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	5e-75	NF-YC family protein