PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001029-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 543aa MW: 61065.9 Da PI: 7.1506

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001029-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.5	4.9e-30	351	442	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ + + +k+plWe++s+km e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy++ql AUR62001029-RA 351 RWPRDEVLALINIRCSLFNNNGGDThhdtetySKGPLWERISQKMTELGYKRSAKRCKEKWENINKYFRKTKDLNKKR-SVDSRTCPYYHQLS 442 8************87776664333444555*****************************************8.78889*****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MRLFLTRNDV VKDETLQLDP TRLQDGGETQ RSSSSSSLML LPEIPWSNDE MLALFRIRSS 60 MDNTWFPDFI WENVSRLFGE LEELCNNNNT NNINVDHDDG GDDHQKGSLP DQCERDHTLE 120 TWFCEKIVSK MMAQQEELHC KIIRDMVKRD EEKISKEEAW KKQEFERLEK ELEARAHEQA 180 VSGDRQTKIL GFLKKFSTSS SNFLDSQSFK EALEKLNKVP KMTSSNSSIL TQDSISVQLQ 240 PTSSCTTHNP LVNNIPSSSS NENLALDNSK STLPLKPSSL DHQNPNPLPS HQNESLKIPS 300 LVSSRKFSRS DHPSTNAADH ITNIKALENN KSGGLKSVVG NNGNKDDTGR RWPRDEVLAL 360 INIRCSLFNN NGGDTHHDTE TYSKGPLWER ISQKMTELGY KRSAKRCKEK WENINKYFRK 420 TKDLNKKRSV DSRTCPYYHQ LSHLYSQGSL VGPTDRPTNH PGSPENRSMA MSGQSQGNGS 480 STPPANNGAT NTMQDESSLH VYSSMQANVE PGHSCGKALK GTHVPLNMCP CRTSLTHYVQ 540 DA*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MRLFLTRNDV VKDETLQLDP TRLQDGGETQ RSSSSSSLML LPEIPWSNDE MLALFRIRSS  60
MDNTWFPDFI WENVSRLFGE LEELCNNNNT NNINVDHDDG GDDHQKGSLP DQCERDHTLE  120
TWFCEKIVSK MMAQQEELHC KIIRDMVKRD EEKISKEEAW KKQEFERLEK ELEARAHEQA  180
VSGDRQTKIL GFLKKFSTSS SNFLDSQSFK EALEKLNKVP KMTSSNSSIL TQDSISVQLQ  240
PTSSCTTHNP LVNNIPSSSS NENLALDNSK STLPLKPSSL DHQNPNPLPS HQNESLKIPS  300
LVSSRKFSRS DHPSTNAADH ITNIKALENN KSGGLKSVVG NNGNKDDTGR RWPRDEVLAL  360
INIRCSLFNN NGGDTHHDTE TYSKGPLWER ISQKMTELGY KRSAKRCKEK WENINKYFRK  420
TKDLNKKRSV DSRTCPYYHQ LSHLYSQGSL VGPTDRPTNH PGSPENRSMA MSGQSQGNGS  480
STPPANNGAT NTMQDESSLH VYSSMQANVE PGHSCGKALK GTHVPLNMCP CRTSLTHYVQ  540
DA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	2e-47	Trihelix family protein