PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001045-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CPP

Protein Properties

Length: 738aa MW: 81690.5 Da PI: 6.415

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001045-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.8	6.9e-16	468	506	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YCeCfaag +C e C+C+dC+Nk AUR62001045-RA 468 SCKRCNCKRSKCLKLYCECFAAGLYCVEPCNCQDCFNKP 506 689**********************************96 PP
2	TCR	52.3	1.1e-16	552	591	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeCf+ g+ Cs C+Ce+CkN+ AUR62001045-RA 552 RHKRGCNCKKSGCLKKYCECFQGGVGCSFGCRCEGCKNTF 591 589***********************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MDSPVFNYIS TLSPIKPFSL GHSTQPFHLL NFSSPQAFKT PPTCPREPKF PRPLHVSEVP 60 KNNFSQNGSE GKNAEASSAI EPTDLHTEKV DKIDSSVTVS TADESSKLVS GIPRSMKYEC 120 NSPENNVVNS DVVKTHSEFN VAGTELFPAK VKQDNSKEAD CSFGNEMGLL ANPMAQNKEV 180 CEWEKFVCEA SDMSNYHSPT EENYQDGSDD RNTDSGMLSF VATVLQPPSE HINDPPKLDP 240 DCHIISENRH MDVPMNKQGE MGNLNERNQV TTGDASVLAE EVVHYSRTEI GDKSGSQQQQ 300 TTRRRCLVYE MPGSHYRKLL ADSTGNSPTK PAASSSILND KCLMVSRPGG NKFSSALPGI 360 GLHLNTLTAG AKDKIIVKRQ TLTCRRQLIS SQCTTSAIGS LNSDTKPITT QINPTPNVVK 420 REPEEQKEEV QVSGDVSENS IYGEGIEFPQ NSFKKKRRKA EIIGEADSCK RCNCKRSKCL 480 KLYCECFAAG LYCVEPCNCQ DCFNKPVHEE TVLETRRQIE SRNPLAFAPK VIRCSGTPNN 540 EEELIKTPAS ARHKRGCNCK KSGCLKKYCE CFQGGVGCSF GCRCEGCKNT FGRKEGTEII 600 LYQETRFLQR NASDVSSLND LPITNEEDHD QETPEPSMNA RQPVRQPFHF DQAAFEEDIK 660 IGAQEDDASE ALTGEYSLPT TCVKSASPNC KRISYPHCDF ETSPAWRSCR KLILRSISSF 720 PTFTAEKEST QLHGKLQ*

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MDSPVFNYIS TLSPIKPFSL GHSTQPFHLL NFSSPQAFKT PPTCPREPKF PRPLHVSEVP  60
KNNFSQNGSE GKNAEASSAI EPTDLHTEKV DKIDSSVTVS TADESSKLVS GIPRSMKYEC  120
NSPENNVVNS DVVKTHSEFN VAGTELFPAK VKQDNSKEAD CSFGNEMGLL ANPMAQNKEV  180
CEWEKFVCEA SDMSNYHSPT EENYQDGSDD RNTDSGMLSF VATVLQPPSE HINDPPKLDP  240
DCHIISENRH MDVPMNKQGE MGNLNERNQV TTGDASVLAE EVVHYSRTEI GDKSGSQQQQ  300
TTRRRCLVYE MPGSHYRKLL ADSTGNSPTK PAASSSILND KCLMVSRPGG NKFSSALPGI  360
GLHLNTLTAG AKDKIIVKRQ TLTCRRQLIS SQCTTSAIGS LNSDTKPITT QINPTPNVVK  420
REPEEQKEEV QVSGDVSENS IYGEGIEFPQ NSFKKKRRKA EIIGEADSCK RCNCKRSKCL  480
KLYCECFAAG LYCVEPCNCQ DCFNKPVHEE TVLETRRQIE SRNPLAFAPK VIRCSGTPNN  540
EEELIKTPAS ARHKRGCNCK KSGCLKKYCE CFQGGVGCSF GCRCEGCKNT FGRKEGTEII  600
LYQETRFLQR NASDVSSLND LPITNEEDHD QETPEPSMNA RQPVRQPFHF DQAAFEEDIK  660
IGAQEDDASE ALTGEYSLPT TCVKSASPNC KRISYPHCDF ETSPAWRSCR KLILRSISSF  720
PTFTAEKEST QLHGKLQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	454	458	KKKRR
2	454	459	KKKRRK
3	455	459	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	4e-78	CPP family protein