PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001436-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 359aa MW: 39703.7 Da PI: 10.2222

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001436-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.7	8.6e-15	53	137	4	86
trihelix 4 kqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ ++ +qCk++++ ++k+yk++k+ ++ ++ s ++p+fd+l+ AUR62001436-RA 53 QRATSVLIDAWGERYMELSRGNLKQKHWKEVADIVssreDFTKVPKTDIQCKNRIDTVKKKYKAEKQKVASG-CGPS-RWPFFDRLD 137 67899****************************85444445667889******************8.6665.8****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDEDDETRSH TSIGSEPHSP PSPPSGQITV TVAAEPPSTT PSSTPQPPPQ LSQRATSVLI 60 DAWGERYMEL SRGNLKQKHW KEVADIVSSR EDFTKVPKTD IQCKNRIDTV KKKYKAEKQK 120 VASGCGPSRW PFFDRLDRLI GPAAATPNSA KGPGSGLGPL TTATVSTGGP PPHGKPVPVG 180 IPSLQFTPPS GIPQMRYNNN NINTPASGAT SNVNRLQQLE QIQKHQQQFR RVPPPVESDS 240 DPEEWSHDSG DSLPPERTGF DRRKRPRMDG NRGGERGKAK GKGRDKKEAV RVWGSSVRDL 300 TRAIMKFGEA YEAAESAKLQ HIVEMEMQRM KFAKELELQR MKFMMKTQLE LSQLNGNNN

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDEDDETRSH TSIGSEPHSP PSPPSGQITV TVAAEPPSTT PSSTPQPPPQ LSQRATSVLI  60
DAWGERYMEL SRGNLKQKHW KEVADIVSSR EDFTKVPKTD IQCKNRIDTV KKKYKAEKQK  120
VASGCGPSRW PFFDRLDRLI GPAAATPNSA KGPGSGLGPL TTATVSTGGP PPHGKPVPVG  180
IPSLQFTPPS GIPQMRYNNN NINTPASGAT SNVNRLQQLE QIQKHQQQFR RVPPPVESDS  240
DPEEWSHDSG DSLPPERTGF DRRKRPRMDG NRGGERGKAK GKGRDKKEAV RVWGSSVRDL  300
TRAIMKFGEA YEAAESAKLQ HIVEMEMQRM KFAKELELQR MKFMMKTQLE LSQLNGNNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-42	Trihelix family protein