PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62001574-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family YABBY
Protein Properties Length: 187aa    MW: 20720.2 Da    PI: 7.5019
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62001574-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY222.99.1e-6931603170
           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                       +s+e+vCyv+C+fC+tilavsvP  s++++vtvrCGhC++llsvn+  +   ++ ++++++   +++ ++         s+ + +  +s+s+ 
  AUR62001574-RA   3 FSTSAERVCYVHCTFCKTILAVSVPCCSMYNMVTVRCGHCANLLSVNIGLSPPSMPHQDNFQHCNYQDVSKDSS-------ST-I-TGGSSSSTI 88 
                     56789*********************************************999999999866654444433322.......22.2.222333333 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +++ s+++d + +r+pp irPPekrqrvPsayn+fikeeiqrikasnP+ishreafsaaaknWahfP+ihfgl
  AUR62001574-RA  89 TTMASDDHDVQQTRPPP-IRPPEKRQRVPSAYNKFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFGL 160
                     33457888888888777.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MEFSTSAERV CYVHCTFCKT ILAVSVPCCS MYNMVTVRCG HCANLLSVNI GLSPPSMPHQ  60
DNFQHCNYQD VSKDSSSTIT GGSSSSTITT MASDDHDVQQ TRPPPIRPPE KRQRVPSAYN  120
KFIKEEIQRI KASNPEISHR EAFSAAAKNW AHFPHIHFGL NLDGQRQERL DQPVSGEGTN  180
KSDGFY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-72YABBY family protein