PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62001885-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 172aa    MW: 18915.6 Da    PI: 5.7221
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62001885-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.56.5e-4581071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++apyfp ++p++fa vhk+FGasnv+k+l++lp e+r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la
  AUR62001885-RA   8 PCASCKLLRRRCAKDCIFAPYFPPDDPQRFALVHKVFGASNVSKMLQELPVEQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLA 102
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  AUR62001885-RA 103 MAQAE 107
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MGGTGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPQRFALV HKVFGASNVS KMLQELPVEQ  60
RADAVSSLVY EANARVRDPV YGCVGAISFL QNQVSQLQMQ LAMAQAEILS IQMHQDPTTT  120
LLQNQIEFPD DKSLLLATSN SFSNLQQYLN DFAASTGNVI QDPLKRESLW T*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-72LBD family protein