PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001998-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 342aa MW: 38482.4 Da PI: 6.7887

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001998-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.8	1.5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++++G g+W++ ++ g++R++k+c++rw +yl AUR62001998-RA 14 KGPWTPEEDQKLVNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	58.5	1.5e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l AUR62001998-RA 67 RGKFTPEEEQTILNLHAILGNK-WSAIANHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGRSPCCDEL GLKKGPWTPE EDQKLVNYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF TPEEEQTILN LHAILGNKWS AIANHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DIFSSLPHLI ALANLKELVE NNSWEEQAVR LQTEVAKLQY LQYLFQPPTN 180 YPMPNLDMDT LNLLNSLPSA FSSKDNNNNF NHNLNTNPVL NTANLDSPNP FDAIHDHLPS 240 LKTLETPINL INKDNNNNNG ISLVNNDQDQ IVFHRQPCEF TVLSKGENSP TSPWLPSSPS 300 PPPAATTTTS ASLIDGCNTT SATSFWPDHL LLEDSLFNDI P*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGRSPCCDEL GLKKGPWTPE EDQKLVNYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TPEEEQTILN LHAILGNKWS AIANHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLPHLI ALANLKELVE NNSWEEQAVR LQTEVAKLQY LQYLFQPPTN  180
YPMPNLDMDT LNLLNSLPSA FSSKDNNNNF NHNLNTNPVL NTANLDSPNP FDAIHDHLPS  240
LKTLETPINL INKDNNNNNG ISLVNNDQDQ IVFHRQPCEF TVLSKGENSP TSPWLPSSPS  300
PPPAATTTTS ASLIDGCNTT SATSFWPDHL LLEDSLFNDI P*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	1e-105	MYB family protein