PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62002526-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 91aa    MW: 10438.1 Da    PI: 9.8849
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62002526-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.13.1e-201054246
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    +ien++ r+ t+skR +g+ KK +ELSvLCd++++vii++++ ++
  AUR62002526-RA 10 FIENNTARKATLSKRTHGLVKKTQELSVLCDVDACVIIYAKDTQV 54
                    8***************************************98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    
MTRKKVKLAF IENNTARKAT LSKRTHGLVK KTQELSVLCD VDACVIIYAK DTQVPVVWPS  60
SDPEVRRIIA KYQDNPDMYQ LERRLDQQSF *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-22M-type_MADS family protein