PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62002527-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23215.3 Da    PI: 8.3284
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62002527-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.6e-161154346
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    i++   r+ ++++R +g+lKK eE+SvLCd++++ ii+++++++
  AUR62002527-RA 11 IKDVASRKSSLTNRSHGLLKKTEEMSVLCDVDACAIIYGKDDQV 54
                    788899**********************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MSRKNVKLSI IKDVASRKSS LTNRSHGLLK KTEEMSVLCD VDACAIIYGK DDQVPLVWPS  60
SETEVRRIIN NYKSMSHVGQ SERQLDQQSL LKQTVQKNEE KLARIQSKNR ELQMENIITD  120
IMTGRATLEQ VPPCDLDYMI RVLQERMKLV KNRISNWENN INNPPFQNSN TNRDDNLKIN  180
SSLCHEDGVM EASTSRNNHT SE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-23M-type_MADS family protein