PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62002528-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22185.5 Da    PI: 10.127
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62002528-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.33.4e-171054246
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    +ien s r v+ +kR +g+ KK +E+SvLCd++++ ii++++ ++
  AUR62002528-RA 10 FIENASSRRVSHTKRSHGLAKKTQEMSVLCDVDACAIIYGKDEQV 54
                    8***************************************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MGRKKVKLAF IENASSRRVS HTKRSHGLAK KTQEMSVLCD VDACAIIYGK DEQVPVVWPS  60
SETEVRRIIN NYKSKYGIGQ SSERQLDQQL LLNQTVKKTQ EKLARIQRKN RELQMENMAT  120
DIMTGKSTLD QVAPNDLGDL IWVLEDRMKA IKYRICNWEN NSNNPHFLNP NANHGDGMME  180
AIFGVVVRKR IVVS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-23M-type_MADS family protein