PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62002530-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 104aa    MW: 11752.5 Da    PI: 9.816
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62002530-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12e-171054246
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     ien+s r vt+ kR + + KK  ELSvLC+++++ ii++++ ++
  AUR62002530-RA 10 YIENDSSRRVTYQKRVKNLVKKTRELSVLCGVDACAIIYGQDEQV 54
                    59***************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    
MVRKKAKLAY IENDSSRRVT YQKRVKNLVK KTRELSVLCG VDACAIIYGQ DEQVPVVWPS  60
SEEEAKRIIS YYNSKSDLDP SQRGFNQYTF LNDSVIKAKG KGC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.27e-22M-type_MADS family protein