PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62002596-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 306aa    MW: 34510.9 Da    PI: 5.6809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62002596-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.7e-192067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   AUR62002596-RA 20 RGPWTVEEDLALINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding50.64.4e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   AUR62002596-RA  73 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MDGNNTTKSV NSEDELDLRR GPWTVEEDLA LINYIATHGE GRWNSLARCA GLKRTGKSCR  60
LRWLNYLRPD VRRGNITLEE QLLILELHSR WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
HAKQLKCDVN SKQFKDTMRY LWMPRLVERI QAAAATNGPH TTATATTSGG SGTTTATGGP  180
TMGYTDNFMH APVNSNFTPE NSGNSSDSYG TQVSDFGDYY GIPVANQSVN QDYYQGDQVN  240
YGGDNSLTSP NCNYLTNQGM DFQGVDNYME QNSQQQWSSF GLGDTTDNLW NIEDIYVLQQ  300
QFSNM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-89MYB family protein