PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62002867-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 404aa MW: 45998.5 Da PI: 6.0488

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62002867-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.7	4.1e-07	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C + H+ H++v AUR62002867-RA 16 ARACDCCIRKRARWYCPADDAFLCQSCDGTVHSAnllarrHERV 59 578*****************************657888888876 PP
2	CCT	68.5	1.8e-23	349	392	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ AUR62002867-RA 349 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 392 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MVSDKKIANA VSGKTARACD CCIRKRARWY CPADDAFLCQ SCDGTVHSAN LLARRHERVR 60 LKTASLKRVQ RLDLPSWHRG LTRKPRTPRH GKHQSKFEER NPLHVIVPEL GMEETTSSQD 120 GESEEQLLYR VPIYDPFVTD FRSSPTVDDI RPLELEGGSD VSKSTISNSK QSPDNYMPSD 180 MDLEEFAADV ETLLGKEEDE LCDEGEMIRG YEIEAESNNV VIKEPLELSF VYDEHDFGTT 240 WEDEDDHKKN MMIEPSVINE SFKFEENDET EKNKTSNILL RLDYEAISNA WASLGSPWIT 300 GQRPEINLDD CWPHCTQGTC GLDGSRHQIY GEYQMGGFVG NGGVGDGGRE ARVSRYREKR 360 RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RSSFAAANAA FPK*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MVSDKKIANA VSGKTARACD CCIRKRARWY CPADDAFLCQ SCDGTVHSAN LLARRHERVR  60
LKTASLKRVQ RLDLPSWHRG LTRKPRTPRH GKHQSKFEER NPLHVIVPEL GMEETTSSQD  120
GESEEQLLYR VPIYDPFVTD FRSSPTVDDI RPLELEGGSD VSKSTISNSK QSPDNYMPSD  180
MDLEEFAADV ETLLGKEEDE LCDEGEMIRG YEIEAESNNV VIKEPLELSF VYDEHDFGTT  240
WEDEDDHKKN MMIEPSVINE SFKFEENDET EKNKTSNILL RLDYEAISNA WASLGSPWIT  300
GQRPEINLDD CWPHCTQGTC GLDGSRHQIY GEYQMGGFVG NGGVGDGGRE ARVSRYREKR  360
RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RSSFAAANAA FPK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	376	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	3e-92	CO-like family protein