PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003076-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

YABBY

Protein Properties

Length: 162aa MW: 18089.7 Da PI: 8.5028

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003076-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	127.8	1.5e-39	18	162	6	159
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +e++Cyv+CnfCnt++ +P + l+ ++tv+CGhC+++ ++ + q + +++ ++ + l++ + +++ + ++s+++s++s + AUR62003076-RA 18 PPEHLCYVRCNFCNTVV---IPCKRLLDTITVKCGHCSNVSFLSTRPPLQGQCLDHQITLQGFNF----LEKPGGFCSTID--HHSNKKSEPSPS 103 68***********76...7**************98766666665555444443333332....222233333333..333333333433 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 s+ +e v+ p v +PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aakn AUR62003076-RA 104 SSSTLTEPVSPRPFVCKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKN 162 344445555555779*****************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MNTNTMEDKV GSELAPPPPE HLCYVRCNFC NTVVIPCKRL LDTITVKCGH CSNVSFLSTR 60 PPLQGQCLDH QITLQGFNFL EKPGGFCSTI DHHSNKKSEP SPSSSSTLTE PVSPRPFVCK 120 PPEKKHRLPS AYNRFMKEEI QRIKAANPEI PHREAFSTAA KN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	6e-48	YABBY family protein