PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003180-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 464aa MW: 48438.7 Da PI: 8.3391

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003180-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H AUR62003180-RA 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MPADLDDSSA KTMSNNTGAS GEASVSSSGD QTEPLKPPTK KKRNQPGMPD PDAEVIALSP 60 KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVKKRVY VCPEISCVHH 120 DPSRALGDLT GIKKHFCRKH GEKKMEMRDS FITHRAFCDA LAEESARNHP NGKNNANNNS 180 TKMEIESKAS AVIASPPPAA APPQPSVAQQ MPPPSPLPAP RQSTPPPPPA PTQSTPISVT 240 PATTMVSSVL PIQSSAQPAS LQSHANPAFS DFIQTMTQPE CPPSELPQSA PAEPISLCLA 300 TNHGSSIFGP AGQERRQYAP LPQPAMSATA LLQKAAQMGA NGGSLLRGLG LVSSTSSAGP 360 SDSLQWTSRQ VEPETSPVQS GLGLGLPCDE GSGLKELMIG SSSMFGPKQP TLDFLGLGMA 420 AGGSPNGGLS ALITSMGNGL DVAAAAASFG GPEFAGKDIG RSS*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MPADLDDSSA KTMSNNTGAS GEASVSSSGD QTEPLKPPTK KKRNQPGMPD PDAEVIALSP  60
KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVKKRVY VCPEISCVHH  120
DPSRALGDLT GIKKHFCRKH GEKKMEMRDS FITHRAFCDA LAEESARNHP NGKNNANNNS  180
TKMEIESKAS AVIASPPPAA APPQPSVAQQ MPPPSPLPAP RQSTPPPPPA PTQSTPISVT  240
PATTMVSSVL PIQSSAQPAS LQSHANPAFS DFIQTMTQPE CPPSELPQSA PAEPISLCLA  300
TNHGSSIFGP AGQERRQYAP LPQPAMSATA LLQKAAQMGA NGGSLLRGLG LVSSTSSAGP  360
SDSLQWTSRQ VEPETSPVQS GLGLGLPCDE GSGLKELMIG SSSMFGPKQP TLDFLGLGMA  420
AGGSPNGGLS ALITSMGNGL DVAAAAASFG GPEFAGKDIG RSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	7e-81	C2H2 family protein