PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003475-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 475aa MW: 50179.5 Da PI: 8.8322

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003475-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H AUR62003475-RA 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	14.2	0.00013	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ AUR62003475-RA 83 FKCEKCSKRYAVQSDWKAHSKTC 105 89*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLRQKTNK DQVRKKVYLC PEPTCVHHDP 60 ARALGDLTGI KKHYSRKHGE KKFKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR 120 RDSFITHRAF CDALAQESAR HPSSLSTLGS HLFGPTSAVG GGNAGNNNMG LGVGLSHQVG 180 NHLPVSLSDQ MTSDILRLGG GARGVGTGQF DHLLGPGSFR PQMQQSHQGN FYLSDQTGGP 240 NHYANSNNND QENQSQNAGG GIFSNKLFTG QLPVPDLGTT GSGDHNGMFS SSGGDALFGG 300 PSSGGLSSLY TTGPGLQGGS PHMSATALLQ KAAQMGSTTS TSNASATALL KGLEAKPTPQ 360 QSAPPPPPTS AGGGGFGGLF GENDQNNLHD LLMRDNLMNN PFFGGDHQTG AASDHNGNYG 420 FNPNKTGLGV GSSDRLTRDF LGVGEIVRSM SGNGGGFPTN SQGMASLENE LGFV*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLRQKTNK DQVRKKVYLC PEPTCVHHDP  60
ARALGDLTGI KKHYSRKHGE KKFKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR  120
RDSFITHRAF CDALAQESAR HPSSLSTLGS HLFGPTSAVG GGNAGNNNMG LGVGLSHQVG  180
NHLPVSLSDQ MTSDILRLGG GARGVGTGQF DHLLGPGSFR PQMQQSHQGN FYLSDQTGGP  240
NHYANSNNND QENQSQNAGG GIFSNKLFTG QLPVPDLGTT GSGDHNGMFS SSGGDALFGG  300
PSSGGLSSLY TTGPGLQGGS PHMSATALLQ KAAQMGSTTS TSNASATALL KGLEAKPTPQ  360
QSAPPPPPTS AGGGGFGGLF GENDQNNLHD LLMRDNLMNN PFFGGDHQTG AASDHNGNYG  420
FNPNKTGLGV GSSDRLTRDF LGVGEIVRSM SGNGGGFPTN SQGMASLENE LGFV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	46	KLRQKTNKDQVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	2e-98	C2H2 family protein