PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62003535-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 377aa    MW: 40404.3 Da    PI: 7.5994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62003535-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00143659123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    +kC+ C+k  s+   ++ H    H
  AUR62003535-RA 36 FKCHVCNKKLSTAGGMVIHVLQvH 59
                    89************9999987655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MGKKKKRQID KVFCYYCDRE FDDEKILLQH QKAKHFKCHV CNKKLSTAGG MVIHVLQVHK  60
ENVTKVPNAK PEREATDIEI YGMQGIPPDV LAAHYGEQED DTPSKSAKVD FPTTNIVGGM  120
MPGAVGFAPP GTYGMMQRPM YNPAVPGPLG WQLPRPPAWY PPPMAMSMPP AVSVPPGASV  180
PPQQPLFPVQ SIAPQLSSTV APVSQPPYPP GVHSSPAPIP VSQPLFPVGA TANMPNQTSA  240
VPAPGLLPSM STDMKASAAT YSNAPPNVVN NYHLPNGQGA AINSHSYASG PNTGGPSIGP  300
PPVIANKAPA NQPAGNEVYL VWDDEAMSME ERRASLPKHQ VHDETSQCFP GQLLSNFWLS  360
MYCVEAYPPI QKLLLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434KKKRQIDKVFCYYCDREFDDEKILLQHQKAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-110C2H2 family protein