PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003804-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 339aa MW: 38119.9 Da PI: 6.6987

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003804-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.8	1.4e-19	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++++G g+W++ ++ g++R++k+c++rw +yl AUR62003804-RA 13 KGPWTPEEDQKLVNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 60 79********************************************97 PP
2	Myb_DNA-binding	58.5	1.5e-18	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l AUR62003804-RA 66 RGKFTPEEEQTILNLHAILGNK-WSAIANHLP-GRTDNEIKNFWNTHL 111 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
GRSPCCDELG LKKGPWTPEE DQKLVNYIQK HGHGSWRALP KLAGLNRCGK SCRLRWTNYL 60 RPDIKRGKFT PEEEQTILNL HAILGNKWSA IANHLPGRTD NEIKNFWNTH LKKKLIQMGF 120 DPMTHRPRTD IFSSLPHLIA LANLKELVEN NSWEEQAVRL QTEVAKLQYL QYLFQPPTNY 180 PMPNLDMDTL NLLNSLPSAF STKDNNNNNF NHNLNPVLNT ANLDSPNPFD AIHDHLPSLK 240 TLETPTNFIN KDNNNNGISL VSNDQDQVVF HHQPCEFTVL SKGENSPTSP WLPSSPSPPP 300 VTTAATSAPL IDGCNTTSAT SFWPDHLLLE DSLFNDIP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	1e-104	MYB family protein