PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003915-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 499aa MW: 54820.1 Da PI: 5.5378

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003915-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F++ ++ Hi ++ AUR62003915-RA 129 FECPICGSGFTSEEDVSIHIESC 151 89*****************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MDDMKDKFKG FMKKVNTQMS SSSSGKFKGQ GRVLGSSSSS GPTNPNLTRP SQSVNPNRNQ 60 NPSSVQTKPL PQKNSPVSDP RPTSFEGQKG SNSNPDSKQG RPSKDGFDPF DSLITSGERN 120 KNGYSLNVFE CPICGSGFTS EEDVSIHIES CIVAKTSKNG DGVELDLDLG SDSVLMDGNE 180 NKADSTNKLG GCVSVYLSGN PSDSSVDVVM RLLRNIVKEP ENPKFRKIRM GNPKIREAIG 240 EVTGGIELLE EVGFELKEEG GEMWSVMDTP SEDRLLKIKE TVNIMEQAKP DGSVSSAPLV 300 KVDEKVEVEK KVKENEPKII DREIKVFFSV SESVAARIVL PDSFYQLSSE EVRREAEMRK 360 KKMADSQLLI PKSFKEKQAQ AARKRYTRTI IRVQFPDGVV LQGVFSPKEP TSVLYEFVSS 420 ALKQQGLEFE LIHPVPLKRR VIPCFPALGE RALTLEQEDL VPSALVKFKP IETDNMVFTG 480 LTNELLEISE PLGSSSTS*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MDDMKDKFKG FMKKVNTQMS SSSSGKFKGQ GRVLGSSSSS GPTNPNLTRP SQSVNPNRNQ  60
NPSSVQTKPL PQKNSPVSDP RPTSFEGQKG SNSNPDSKQG RPSKDGFDPF DSLITSGERN  120
KNGYSLNVFE CPICGSGFTS EEDVSIHIES CIVAKTSKNG DGVELDLDLG SDSVLMDGNE  180
NKADSTNKLG GCVSVYLSGN PSDSSVDVVM RLLRNIVKEP ENPKFRKIRM GNPKIREAIG  240
EVTGGIELLE EVGFELKEEG GEMWSVMDTP SEDRLLKIKE TVNIMEQAKP DGSVSSAPLV  300
KVDEKVEVEK KVKENEPKII DREIKVFFSV SESVAARIVL PDSFYQLSSE EVRREAEMRK  360
KKMADSQLLI PKSFKEKQAQ AARKRYTRTI IRVQFPDGVV LQGVFSPKEP TSVLYEFVSS  420
ALKQQGLEFE LIHPVPLKRR VIPCFPALGE RALTLEQEDL VPSALVKFKP IETDNMVFTG  480
LTNELLEISE PLGSSSTS*