PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003939-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 303aa MW: 32875.6 Da PI: 8.2322

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003939-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61	2.5e-19	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + AUR62003939-RA 10 KGPWSPEEDDALTRLVQKHGPRNWTLISKSIP-GRSGKSCRLRWCNQ 55 79****************************.*********985 PP
2	Myb_DNA-binding	54	3.8e-17	64	106	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ AUR62003939-RA 64 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 106 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MNRKEVDRIK GPWSPEEDDA LTRLVQKHGP RNWTLISKSI PGRSGKSCRL RWCNQLSPQV 60 EHRAFTPEED DTIIRAHARF GNKWATIARL LSGRTDNAIK NHWNSTLKRK CSAMVSSAPD 120 DFPGDFPPPL KRAMSEGAYV ILRNVSGLSL YXXXXXXXPG SPGSSDASDS GSHVFRPVPI 180 PGPVNIPPPP VLSPATDLSL SLPGSDSCEV SNSDHEPMNG GSPIQVFPTS SPVMFPPPPP 240 AFSQEFLAVM QEMIKKEVRT YMEGVEMSNN GIGGFNHGGF CSQAADGVMR AAMSRIGIGK 300 IE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	9e-76	MYB family protein