PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004159-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 237aa MW: 26172.9 Da PI: 5.057

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004159-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H r+H AUR62004159-RA 161 HECPICLRVFASGQALGGHKRSH 183 79*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MERHRCKLCL KKFANGRALG GHMKFHMLNH EHEDEVEFAT RGDDEFIVVE PTGSSSLVTL 60 QDRESGRNKS SGSSAVDVEA DPPGSSITEV TSDEDLAFCL MMMSRDKWNS SVGFRSYQAL 120 GGHRASHKKL RVNESEQSAD YTNEDENRVD DGLDSMIKKV HECPICLRVF ASGQALGGHK 180 RSHVIVSNNG VDHNNNLLDN SKITKIITRD SLIDLNLPAS VEDEDEDDSA VSDVHF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-46	C2H2 family protein