PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004224-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 239aa MW: 26787.2 Da PI: 9.8564

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004224-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.4	3.6e-31	16	102	5	90
DUF260 5 CkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 C++ kC+ +C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq +++ AUR62004224-RA 16 CRFFLWKCVVGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQRRRK 102 999999************9989********************************************************98776 PP
2	DUF260	98.9	5.1e-31	136	218	9	90
DUF260 9 rrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +kC+ +C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ + AUR62004224-RA 136 AQKCVVGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQITVV 218 469***********9989*********************************************************9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MRKFHYILFS SLNDICRFFL WKCVVGCIFA PYFDSEQGAA HFAAVHKVFG ASNVSKLLLH 60 IPVHKRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQRR RKNGKRLREG GLEEEVRVLQ 120 FGGMRKRKAN SGSRKAQKCV VGCIFAPYFD SEQGAAHFAA VHKVFGASNV SKLLLHIPVH 180 KRLDAVVTIC YEAQARLRDP VYGCVAHIFA LQQQITVVSY GLTEFLCADN KNVQFNVA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	128	RRRKNGKRLREGGLEEEVRVLQFGGMRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	1e-48	LBD family protein