PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004274-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 222aa MW: 25236.8 Da PI: 9.6937

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004274-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.2	1.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s AUR62004274-RA 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 79***********************************************86 PP
2	K-box	87	3.6e-29	82	173	8	99
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +e+++++l++e a L k+ie + ++R+llGe+L+s+sl+eLqqLe+qLe+s++kiR++Kn+++ eqi++l+kkek l en +L++k+e AUR62004274-RA 82 ASAEENMQNLKEETATLVKKIEAVEASKRRLLGENLGSCSLEELQQLESQLERSVSKIRARKNQVFNEQIKQLRKKEKHLAAENARLTEKYE 173 378999**********************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASC 60 SMQETIGRYQ RHAREVQPAK EASAEENMQN LKEETATLVK KIEAVEASKR RLLGENLGSC 120 SLEELQQLES QLERSVSKIR ARKNQVFNEQ IKQLRKKEKH LAAENARLTE KYETQPKESR 180 SQPIIAEDAS PSEDTISQIS DVETDLFIGL PETRIRRLTN A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-81	MIKC_MADS family protein