PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62004541-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 203aa    MW: 23240.9 Da    PI: 4.5557
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62004541-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-183284456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ft+eq++ Le+ Fe++ ++  +++ + A++lgL+ rqV +WFqN+Ra++k
  AUR62004541-RA 32 KRRFTDEQVKSLESIFENETKLEPKKKVQVARELGLQPRQVAIWFQNKRARYK 84
                    568*************************************************9 PP
2HD-ZIP_I/II118.82.9e-3831117288
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +krr+++eqvk+LE+ Fe+e+kLep++Kv++areLglqprqva+WFqn+RAR+k+kqlEk+y++Lk++y++l+++ e L+ke+++L 
  AUR62004541-RA  31 NKRRFTDEQVKSLESIFENETKLEPKKKVQVARELGLQPRQVAIWFQNKRARYKSKQLEKEYSTLKSNYNSLAKRFEDLKKEKQSLV 117
                     69**********************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MMFDDGDYYS PSDVFSCINS LPNSKKSKMM NKRRFTDEQV KSLESIFENE TKLEPKKKVQ  60
VARELGLQPR QVAIWFQNKR ARYKSKQLEK EYSTLKSNYN SLAKRFEDLK KEKQSLVLQS  120
NECEAKPALS LEGSEYGACS ILSDEGSSEN TNYFGMEEEA DILTMVQPVD GSLTSGEGWD  180
DLRPDGLFDQ AVDSCQWWDF WS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-50HD-ZIP family protein