PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004685-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 550aa MW: 60918.1 Da PI: 6.9862

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004685-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.6e-19	109	209	2	98
EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +k+lt sd+++ g +++p+ +a+++ + +++ + +++ d +g +W +++iyr++++r++lt+GW++Fv+++ L ++D+ vF ++ + AUR62004685-RA 109 VKKLTASDANNGGGFSVPRYCADSIfpalnfEDDPPF-QNMRIFDVHGVEWPFRHIYRGTPRRHLLTSGWSKFVNSKVLVANDSAVFI--KNkVT 200 79**************************9556555.489999****************************************..45489 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++l+v+v+r AUR62004685-RA 201 GQLFVGVRR 209 999*998 PP
2	Auxin_resp	57.3	6.8e-20	253	338	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvs.dldpvrWpnSkWrsLk 83 a+++a++ ++FevvY+ r + +eFvv ++kvek+ v + G R+kma + ed + + Gtv++v + d+ Wp+S+Wr+L+ AUR62004685-RA 253 AIQKAASYEPFEVVYYSRGGLPEFVVAADKVEKSWAVFWDSGIRVKMARQIEDGGPKPMwfNGTVASVVpAPDQGPWPGSPWRMLQ 338 57889999*******************************************8766555899872458999******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
LSAALAKIIQ GSLIHVPKKD SRVYFFPQGY LEQALNPVPL SSIDTSRCYM QCRVLDRRFY 60 ADTVTDEVFV KFRLMPLKSN GRFVVEDSGS VDNGVEEDEE SENVIESYVK KLTASDANNG 120 GGFSVPRYCA DSIFPALNFE DDPPFQNMRI FDVHGVEWPF RHIYRGTPRR HLLTSGWSKF 180 VNSKVLVAND SAVFIKNKVT GQLFVGVRRA FKPPRQNARF SPWVVLPPPK PRKIGVFARN 240 VRERVPEDAV VDAIQKAASY EPFEVVYYSR GGLPEFVVAA DKVEKSWAVF WDSGIRVKMA 300 RQIEDGGPKP MWFNGTVASV VPAPDQGPWP GSPWRMLQVA WDEADKMEQF KMLSPWQLEC 360 IAPTPPPIHP TFNAAKKLKG VQNSVMLADG KGDISFPQIE FGSMMMGPLS QPYINYNKFP 420 AGMQGARQFP SFYPPSSSIT MNGSSHQGGP DDNMDSSMSQ KVEGVSTNPN VASSSCETPS 480 PDSHNSVQLF GSTSTGLHSC NVTRQGVTSF QLFGKTIHME QPLADTDDIS CTECDAESQR 540 PPVMKPSAM*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

LSAALAKIIQ GSLIHVPKKD SRVYFFPQGY LEQALNPVPL SSIDTSRCYM QCRVLDRRFY  60
ADTVTDEVFV KFRLMPLKSN GRFVVEDSGS VDNGVEEDEE SENVIESYVK KLTASDANNG  120
GGFSVPRYCA DSIFPALNFE DDPPFQNMRI FDVHGVEWPF RHIYRGTPRR HLLTSGWSKF  180
VNSKVLVAND SAVFIKNKVT GQLFVGVRRA FKPPRQNARF SPWVVLPPPK PRKIGVFARN  240
VRERVPEDAV VDAIQKAASY EPFEVVYYSR GGLPEFVVAA DKVEKSWAVF WDSGIRVKMA  300
RQIEDGGPKP MWFNGTVASV VPAPDQGPWP GSPWRMLQVA WDEADKMEQF KMLSPWQLEC  360
IAPTPPPIHP TFNAAKKLKG VQNSVMLADG KGDISFPQIE FGSMMMGPLS QPYINYNKFP  420
AGMQGARQFP SFYPPSSSIT MNGSSHQGGP DDNMDSSMSQ KVEGVSTNPN VASSSCETPS  480
PDSHNSVQLF GSTSTGLHSC NVTRQGVTSF QLFGKTIHME QPLADTDDIS CTECDAESQR  540
PPVMKPSAM*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-102	ARF family protein