PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004710-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 355aa MW: 39222.3 Da PI: 9.764

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004710-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.2e-06	153	175	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg++F ++nL+ H+ + H AUR62004710-RA 153 SCPHCGEVFMKPENLELHQAVrH 175 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MAKTTNPRKL TKEVHRTRRS QPPSQREDDK EKQQSQSQQQ SQALPSWVRP ETASPETLQR 60 KSRGGPTHAS TSTTSSSSHE GSNRSIKSPV LSDLSNTNGV LLKSSSSNST TAANYSIKGI 120 PFRRLSGCYE CRMVVDPVLS FTRDPSLRAT ICSCPHCGEV FMKPENLELH QAVRHAVSEL 180 GPEDTSKNIV EIIFQSSWLK KQTPVCKIDR ILKVHNTQKT INKFEEYRDS IKFKATRLPK 240 KHARCIADGN ELLSIIKNGF KLADEGPTGK DILTTATSGR AHDRADVGSE EQERRAMLVC 300 RVIAGRVKKS PEGGGSEEYD SVAGATGVYS NLDELYVFNP KAILPCFVVI YRGF*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MAKTTNPRKL TKEVHRTRRS QPPSQREDDK EKQQSQSQQQ SQALPSWVRP ETASPETLQR  60
KSRGGPTHAS TSTTSSSSHE GSNRSIKSPV LSDLSNTNGV LLKSSSSNST TAANYSIKGI  120
PFRRLSGCYE CRMVVDPVLS FTRDPSLRAT ICSCPHCGEV FMKPENLELH QAVRHAVSEL  180
GPEDTSKNIV EIIFQSSWLK KQTPVCKIDR ILKVHNTQKT INKFEEYRDS IKFKATRLPK  240
KHARCIADGN ELLSIIKNGF KLADEGPTGK DILTTATSGR AHDRADVGSE EQERRAMLVC  300
RVIAGRVKKS PEGGGSEEYD SVAGATGVYS NLDELYVFNP KAILPCFVVI YRGF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-79	C2H2 family protein