PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004818-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 259aa MW: 29257.6 Da PI: 9.0184

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004818-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l +++k G g+W++ ++ g+ R++k+c++rw +yl AUR62004818-RA 14 KGAWTKEEDERLMNYIKANGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	60.8	2.9e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++ AUR62004818-RA 67 RGNFTEEEDELIINLHSLLGNK-WSLIAAKLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MGRSPCCEKE HTNKGAWTKE EDERLMNYIK ANGEGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIAAKLPGRT DNEIKNYWNT HIKRKLLNRG 120 IDPQTHRTLN STTTTTAATA NNNTNTGPTT KNVVSNNNCY NKNKMNNNNS FQLINVQGST 180 LHFGLGSNLE YEFTTSSNDG KYYCTTFPIS RTFNNVSEHS NNSSSKSVVT MEEGYKEINL 240 ELSISLPTTP KINSASHEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	9e-83	MYB family protein