PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62004911-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 292aa    MW: 33548.1 Da    PI: 5.9347
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62004911-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-16861321056
                     HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     e +++Le++Fe +++++ +++ ++A+ +gL+ rqV +WFqNrRa+++
  AUR62004911-RA  86 EKVKALEKHFEVENKLQPDRKVKIAEDVGLEPRQVAIWFQNRRARWR 132
                     6789******************************************9 PP
2HD-ZIP_I/II112.13.7e-3679170293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kk rl  e+vk+LE++Fe e+kL+p+rKv++a+++gl+prqva+WFqnrRAR+++kqlE++y  L+++ydalk++  +Le+e+ +L  +l++
  AUR62004911-RA  79 KKSRLCLEKVKALEKHFEVENKLQPDRKVKIAEDVGLEPRQVAIWFQNRRARWRAKQLEREYGDLRASYDALKHDYGSLEQEKVDLLGQLND 170
                     99***********************************************************************************9988875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MLSEMPEVTK LHPVPDAFVP VMRFKFNGVS IDLLYAKLSH LSFYIACDKK KALYSEDFQA  60
MLERLEEEDN ADTSRQLMKK SRLCLEKVKA LEKHFEVENK LQPDRKVKIA EDVGLEPRQV  120
AIWFQNRRAR WRAKQLEREY GDLRASYDAL KHDYGSLEQE KVDLLGQLND LRSKIETRKS  180
EMKTTNTTLS NPITINSTDI MNEGTCMNVP LQASPTPSCR TLDPYDMPSS TMTATTLSLD  240
GLQLCKAYQD HITKMEEMGV HNMNNDISGS FFSVDQVPTL HYWYNNSDQF N*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-40HD-ZIP family protein